IL_8JDK_158
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_158 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0866
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8JDK|1|D|C|4596
8JDK|1|D|U|4597
8JDK|1|D|C|4598
8JDK|1|D|A|4599
8JDK|1|D|G|4600
8JDK|1|D|U|4601
8JDK|1|D|A|4602
8JDK|1|D|C|4603
*
8JDK|1|D|G|4608
8JDK|1|D|G|4609
8JDK|1|D|A|4610
8JDK|1|D|A|4611
8JDK|1|D|C|4612
8JDK|1|D|C|4613
8JDK|1|D|G|4614
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain N
- 60S ribosomal protein L9
- Chain a
- 60S ribosomal protein L23
- Chain r
- Ubiquitin-60S ribosomal protein L40
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