IL_8JDK_295
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AACAA(OMU)G*C(PSU)A(PSU)
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_295 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.2892
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8JDK|1|D|A|2832
8JDK|1|D|A|2833
8JDK|1|D|C|2834
8JDK|1|D|A|2835
8JDK|1|D|A|2836
8JDK|1|D|OMU|2837
8JDK|1|D|G|2838
*
8JDK|1|D|C|3850
8JDK|1|D|PSU|3851
8JDK|1|D|A|3852
8JDK|1|D|PSU|3853
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain U
- 60S ribosomal protein L17
- Chain i
- 60S ribosomal protein L31
Coloring options: