IL_8JDK_325
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8JDK|1|w|G|1285
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_325 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3099
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8JDK|1|w|G|1281
8JDK|1|w|A|1282
8JDK|1|w|C|1283
8JDK|1|w|A|1284
8JDK|1|w|G|1285
8JDK|1|w|G|1286
8JDK|1|w|A|1287
8JDK|1|w|OMU|1288
8JDK|1|w|U|1289
8JDK|1|w|G|1290
*
8JDK|1|w|C|1309
8JDK|1|w|U|1310
8JDK|1|w|C|1311
8JDK|1|w|G|1312
8JDK|1|w|A|1313
8JDK|1|w|U|1314
8JDK|1|w|U|1315
8JDK|1|w|C|1316
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 7
- 40S ribosomal protein S10
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