IL_8JDL_157
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDL_157 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0941
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8JDL|1|D|C|4596
8JDL|1|D|U|4597
8JDL|1|D|C|4598
8JDL|1|D|A|4599
8JDL|1|D|G|4600
8JDL|1|D|U|4601
8JDL|1|D|A|4602
8JDL|1|D|C|4603
*
8JDL|1|D|G|4608
8JDL|1|D|G|4609
8JDL|1|D|A|4610
8JDL|1|D|A|4611
8JDL|1|D|C|4612
8JDL|1|D|C|4613
8JDL|1|D|G|4614
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain N
- 60S ribosomal protein L9
- Chain a
- 60S ribosomal protein L23
- Chain r
- Ubiquitin-60S ribosomal protein L40
Coloring options: