IL_8JDL_249

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_249 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.1228

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8JDL|1|w|G|1270
8JDL|1|w|C|1271
8JDL|1|w|C|1272
*
8JDL|1|w|G|1510
8JDL|1|w|U|1511
8JDL|1|w|C|1512

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10

Chain AB

40S ribosomal protein S15

Chain AP

40S ribosomal protein S29