IL_8JDL_265
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8JDL|1|w|C|1553, 8JDL|1|w|C|1554, 8JDL|1|w|C|1557, 8JDL|1|w|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDL_265 not in the Motif Atlas
- Homologous match to IL_8CRE_463
- Geometric discrepancy: 0.4904
- The information below is about IL_8CRE_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8JDL|1|w|G|1550
8JDL|1|w|U|1551
8JDL|1|w|G|1552
8JDL|1|w|C|1553
8JDL|1|w|C|1554
8JDL|1|w|U|1555
8JDL|1|w|A|1556
8JDL|1|w|C|1557
8JDL|1|w|C|1558
*
8JDL|1|w|G|1577
8JDL|1|w|U|1578
8JDL|1|w|A|1579
8JDL|1|w|A|1580
8JDL|1|w|C|1581
8JDL|1|w|C|1582
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 7
- 40S ribosomal protein S10
- Chain AF
- 40S ribosomal protein S19
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
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