IL_8JDM_006
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_006 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.15
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|D|C|30
8JDM|1|D|U|31
8JDM|1|D|G|32
8JDM|1|D|A|33
8JDM|1|D|A|34
8JDM|1|D|U|35
8JDM|1|D|U|36
8JDM|1|D|U|37
*
8JDM|1|D|A|44
8JDM|1|D|U|45
8JDM|1|D|U|46
8JDM|1|D|A|47
8JDM|1|D|G|48
8JDM|1|D|U|49
8JDM|1|D|C|50
8JDM|1|D|A|51
8JDM|1|D|G|52
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L37
- Chain t
- 60S ribosomal protein L36a
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