IL_8JDM_039

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8JDM|1|D|G|748, 8JDM|1|D|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_039 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1733

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8JDM|1|D|G|745
8JDM|1|D|A|746
8JDM|1|D|A|747
8JDM|1|D|G|748
8JDM|1|D|G|749
8JDM|1|D|U|750
8JDM|1|D|G|751
8JDM|1|D|G|752
*
8JDM|1|D|U|911
8JDM|1|D|G|912
8JDM|1|D|U|913
8JDM|1|D|U|914
8JDM|1|D|A|915
8JDM|1|D|C|916
8JDM|1|D|A|917
8JDM|1|D|G|918
8JDM|1|D|C|919

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L14

Chain X

60S ribosomal protein L18a