IL_8JDM_077
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 8JDM|1|D|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_077 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.0957
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8JDM|1|D|U|1905
8JDM|1|D|U|1906
8JDM|1|D|A|1907
8JDM|1|D|A|1908
8JDM|1|D|G|1909
*
8JDM|1|D|C|2067
8JDM|1|D|C|2068
8JDM|1|D|A|2069
8JDM|1|D|U|2070
8JDM|1|D|A|2071
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 60S ribosomal protein L7
- Chain V
- 60S ribosomal protein L18
- Chain j
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L35a
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