IL_8JDM_084

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8JDM|1|D|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_084 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.3316

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8JDM|1|D|U|1957
8JDM|1|D|A|1958
8JDM|1|D|U|1959
8JDM|1|D|A|1960
8JDM|1|D|G|1961
8JDM|1|D|A|1962
8JDM|1|D|C|1963
8JDM|1|D|A|1964
8JDM|1|D|G|1965
*
8JDM|1|D|C|2022
8JDM|1|D|C|2023
8JDM|1|D|G|2024
8JDM|1|D|A|2025
8JDM|1|D|A|2026

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain r

Ubiquitin-60S ribosomal protein L40