IL_8JDM_218
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8JDM|1|w|A|628, 8JDM|1|w|U|630
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_218 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.11
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|G|611
8JDM|1|w|U|612
8JDM|1|w|G|613
8JDM|1|w|C|614
8JDM|1|w|C|615
8JDM|1|w|A|616
8JDM|1|w|G|617
*
8JDM|1|w|C|624
8JDM|1|w|G|625
8JDM|1|w|G|626
8JDM|1|w|OMU|627
8JDM|1|w|A|628
8JDM|1|w|A|629
8JDM|1|w|U|630
8JDM|1|w|U|631
8JDM|1|w|C|632
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain A
- mRNA
- Chain AJ
- 40S ribosomal protein S23
- Chain AQ
- 40S ribosomal protein S30
- Chain C
- Transfer RNA; tRNA
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