IL_8JDM_220

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_220 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1273

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8JDM|1|w|G|665
8JDM|1|w|U|666
8JDM|1|w|U|667
8JDM|1|w|A2M|668
8JDM|1|w|A|669
8JDM|1|w|A|670
8JDM|1|w|A|671
*
8JDM|1|w|U|1161
8JDM|1|w|C|1162

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S23

Chain AM

40S ribosomal protein S26