IL_8JDM_256
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8JDM|1|w|C|1493, 8JDM|1|w|U|1494, 8JDM|1|w|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_256 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1147
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|U|1333
8JDM|1|w|G|1334
8JDM|1|w|G|1335
*
8JDM|1|w|U|1492
8JDM|1|w|C|1493
8JDM|1|w|U|1494
8JDM|1|w|G|1495
8JDM|1|w|U|1496
8JDM|1|w|G|1497
8JDM|1|w|A|1498
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 7
- 40S ribosomal protein S10
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
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