IL_8JDM_260
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8JDM|1|w|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_260 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3893
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8JDM|1|w|C|1395
8JDM|1|w|A|1396
8JDM|1|w|U|1397
8JDM|1|w|G|1398
8JDM|1|w|C|1399
*
8JDM|1|w|G|1447
8JDM|1|w|A|1448
8JDM|1|w|G|1449
8JDM|1|w|G|1450
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AC
- 40S ribosomal protein S16
- Chain AD
- 40S ribosomal protein S17
- Chain AG
- 40S ribosomal protein S20
- Chain AR
- Receptor of activated protein C kinase 1
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