IL_8JDM_297

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

8JDM|1|D|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_297 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.2402

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8JDM|1|D|OMU|2415
8JDM|1|D|G|2416
8JDM|1|D|A|2417
8JDM|1|D|A|2418
8JDM|1|D|C|2419
*
8JDM|1|D|G|2427
8JDM|1|D|A|2428
8JDM|1|D|A|2429

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17

Chain W

60S ribosomal protein L19

Chain q

60S ribosomal protein L39