IL_8JSG_015

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8JSG|1|g|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_015 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2151

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8JSG|1|g|G|147
8JSG|1|g|G|148
8JSG|1|g|A|149
8JSG|1|g|U|150
8JSG|1|g|A|151
8JSG|1|g|A|152
8JSG|1|g|C|153
*
8JSG|1|g|G|168
8JSG|1|g|C|169
8JSG|1|g|U|170
8JSG|1|g|A|171
8JSG|1|g|A|172
8JSG|1|g|U|173
8JSG|1|g|A|174
8JSG|1|g|C|175

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS20