IL_8JSG_031

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8JSG|1|g|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_031 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.2152

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8JSG|1|g|C|569
8JSG|1|g|G|570
8JSG|1|g|U|571
8JSG|1|g|A|572
8JSG|1|g|A|573
8JSG|1|g|A|574
8JSG|1|g|G|575
*
8JSG|1|g|C|880
8JSG|1|g|G|881

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein uS12