IL_8JSG_044

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_044 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.2129

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8JSG|1|g|C|779
8JSG|1|g|A|780
8JSG|1|g|A|781
8JSG|1|g|A|782
8JSG|1|g|C|783
*
8JSG|1|g|G|799
8JSG|1|g|G|800
8JSG|1|g|U|801
8JSG|1|g|A|802
8JSG|1|g|G|803

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS11