IL_8JSG_079

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAA*UUUGC

Length

9 nucleotides

Bulged bases

8JSG|1|g|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_079 not in the Motif Atlas

Geometric match to IL_8C3A_018

Geometric discrepancy: 0.3967

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8JSG|1|g|G|75
8JSG|1|g|G|76
8JSG|1|g|A|77
8JSG|1|g|A|78
*
8JSG|1|g|U|91
8JSG|1|g|U|92
8JSG|1|g|U|93
8JSG|1|g|G|94
8JSG|1|g|C|95

Current chains

Chain g

16S ribosomal RNA

Nearby chains