IL_8JSG_087

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

8JSG|1|g|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_087 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.3056

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8JSG|1|g|G|128
8JSG|1|g|A|129
8JSG|1|g|A|130
8JSG|1|g|A|131
*
8JSG|1|g|U|231
8JSG|1|g|G|232
8JSG|1|g|C|233

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS20

Chain P

Small ribosomal subunit protein uS17

Chain y

30S ribosomal protein S16