IL_8JSH_032

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8JSH|1|g|A|532, 8JSH|1|g|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_032 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3012

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8JSH|1|g|G|515
8JSH|1|g|U|516
8JSH|1|g|G|517
8JSH|1|g|C|518
8JSH|1|g|C|519
8JSH|1|g|A|520
8JSH|1|g|G|521
*
8JSH|1|g|C|528
8JSH|1|g|G|529
8JSH|1|g|G|530
8JSH|1|g|U|531
8JSH|1|g|A|532
8JSH|1|g|A|533
8JSH|1|g|U|534
8JSH|1|g|A|535
8JSH|1|g|C|536

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain t

Small ribosomal subunit protein uS12