IL_8JSH_059

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

8JSH|1|g|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_059 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2439

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8JSH|1|g|A|371
8JSH|1|g|C|372
8JSH|1|g|A|373
8JSH|1|g|A|374
8JSH|1|g|U|375
8JSH|1|g|G|376
*
8JSH|1|g|U|387
8JSH|1|g|G|388
8JSH|1|g|A|389
8JSH|1|g|U|390

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S16