IL_8K2A_068

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

8K2A|1|S1|C|257, 8K2A|1|S1|C|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_068 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.135

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8K2A|1|S1|G|240
8K2A|1|S1|U|241
8K2A|1|S1|G|242
8K2A|1|S1|C|243
8K2A|1|S1|C|244
8K2A|1|S1|A|245
8K2A|1|S1|G|246
*
8K2A|1|S1|C|253
8K2A|1|S1|G|254
8K2A|1|S1|G|255
8K2A|1|S1|U|256
8K2A|1|S1|C|257
8K2A|1|S1|A|258
8K2A|1|S1|C|259
8K2A|1|S1|A|260
8K2A|1|S1|C|261

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SL

Small ribosomal subunit protein uS12m

Chain Si

Small ribosomal subunit protein mS33