IL_8K2A_089
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2A_089 not in the Motif Atlas
- Geometric match to IL_1SA9_002
- Geometric discrepancy: 0.1339
- The information below is about IL_1SA9_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.3
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 47
Unit IDs
8K2A|1|S1|C|627
8K2A|1|S1|A|628
8K2A|1|S1|A|629
8K2A|1|S1|A|630
*
8K2A|1|S1|U|651
8K2A|1|S1|A|652
8K2A|1|S1|A|653
8K2A|1|S1|G|654
Current chains
- Chain S1
- 12S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS2m
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SI
- Small ribosomal subunit protein uS9m
- Chain SZ
- Small ribosomal subunit protein uS3m
- Chain Sk
- Small ribosomal subunit protein mS35
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