IL_8K2B_002
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2B_002 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.1435
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8K2B|1|L1|A|69
8K2B|1|L1|A|70
8K2B|1|L1|A|71
8K2B|1|L1|G|72
8K2B|1|L1|U|73
8K2B|1|L1|A|74
8K2B|1|L1|U|75
*
8K2B|1|L1|A|83
8K2B|1|L1|G|84
8K2B|1|L1|A|85
8K2B|1|L1|A|86
8K2B|1|L1|A|87
8K2B|1|L1|U|88
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L8
- Large ribosomal subunit protein mL64
- Chain LI
- Large ribosomal subunit protein bL9m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain Lb
- Large ribosomal subunit protein bL28m
- Chain Li
- Large ribosomal subunit protein bL35m
- Chain Ly
- Large ribosomal subunit protein mL51
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