IL_8K2B_007

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8K2B|1|L1|G|341, 8K2B|1|L1|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_007 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1412

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8K2B|1|L1|G|236
8K2B|1|L1|A|237
8K2B|1|L1|A|238
8K2B|1|L1|A|239
8K2B|1|L1|C|240
*
8K2B|1|L1|G|339
8K2B|1|L1|U|340
8K2B|1|L1|G|341
8K2B|1|L1|A|342
8K2B|1|L1|U|343
8K2B|1|L1|A|344
8K2B|1|L1|G|345
8K2B|1|L1|C|346

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL4m

Chain LO

Large ribosomal subunit protein uL15m

Chain Ly

Large ribosomal subunit protein mL51