IL_8K2B_043

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCU*AACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_043 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2909

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8K2B|1|L1|U|1283
8K2B|1|L1|C|1284
8K2B|1|L1|U|1285
*
8K2B|1|L1|A|1298
8K2B|1|L1|A|1299
8K2B|1|L1|C|1300
8K2B|1|L1|A|1301

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LP

Large ribosomal subunit protein uL16m

Chain Lj

Large ribosomal subunit protein bL36m