IL_8K2D_006
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0765
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|C|82
8K2D|1|C1|U|83
8K2D|1|C1|U|84
8K2D|1|C1|A|85
8K2D|1|C1|G|86
8K2D|1|C1|U|87
8K2D|1|C1|A|88
8K2D|1|C1|A|89
*
8K2D|1|C1|U|97
8K2D|1|C1|G|98
8K2D|1|C1|A|99
8K2D|1|C1|A|100
8K2D|1|C1|G|101
8K2D|1|C1|C|102
8K2D|1|C1|G|103
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain La
- Large ribosomal subunit protein uL15
Coloring options: