IL_8K2D_023

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1221

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8K2D|1|C1|G|725
8K2D|1|C1|G|726
8K2D|1|C1|G|727
8K2D|1|C1|G|728
*
8K2D|1|C1|U|741
8K2D|1|C1|G|742
8K2D|1|C1|C|743
8K2D|1|C1|A|744
8K2D|1|C1|C|745

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL18A

Chain Lb

Large ribosomal subunit protein eL29