IL_8K2D_050
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_050 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.0804
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8K2D|1|C1|U|1167
8K2D|1|C1|U|1168
8K2D|1|C1|A|1169
8K2D|1|C1|A|1170
8K2D|1|C1|G|1171
*
8K2D|1|C1|C|1328
8K2D|1|C1|U|1329
8K2D|1|C1|A|1330
8K2D|1|C1|U|1331
8K2D|1|C1|A|1332
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lf
- Large ribosomal subunit protein eL33A
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