IL_8K2D_054
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8K2D|1|C1|C|1196, 8K2D|1|C1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_054 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.102
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|G|1194
8K2D|1|C1|A|1195
8K2D|1|C1|C|1196
8K2D|1|C1|A|1197
8K2D|1|C1|C|1198
8K2D|1|C1|C|1199
8K2D|1|C1|A|1200
8K2D|1|C1|C|1201
8K2D|1|C1|A|1202
8K2D|1|C1|A|1203
8K2D|1|C1|A|1204
8K2D|1|C1|A|1205
*
8K2D|1|C1|U|1299
8K2D|1|C1|G|1300
8K2D|1|C1|A|1301
8K2D|1|C1|A|1302
8K2D|1|C1|A|1303
8K2D|1|C1|A|1304
8K2D|1|C1|U|1305
8K2D|1|C1|G|1306
8K2D|1|C1|G|1307
8K2D|1|C1|A|1308
8K2D|1|C1|U|1309
8K2D|1|C1|G|1310
8K2D|1|C1|G|1311
8K2D|1|C1|C|1312
8K2D|1|C1|G|1313
8K2D|1|C1|C|1314
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain Lf
- Large ribosomal subunit protein eL33A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
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