IL_8K2D_061
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8K2D|1|C1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_061 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0735
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8K2D|1|C1|U|1388
8K2D|1|C1|G|1389
8K2D|1|C1|A|1390
8K2D|1|C1|C|1391
8K2D|1|C1|G|1392
8K2D|1|C1|A|1393
8K2D|1|C1|A|1394
8K2D|1|C1|G|1395
*
8K2D|1|C1|U|1415
8K2D|1|C1|C|1416
8K2D|1|C1|G|1417
8K2D|1|C1|A|1418
8K2D|1|C1|A|1419
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Le
- Large ribosomal subunit protein eL32
Coloring options: