IL_8K2D_066
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8K2D|1|C1|A|1588, 8K2D|1|C1|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_066 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1043
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8K2D|1|C1|C|1532
8K2D|1|C1|U|1533
8K2D|1|C1|A|1534
8K2D|1|C1|A|1535
8K2D|1|C1|G|1536
*
8K2D|1|C1|C|1585
8K2D|1|C1|G|1586
8K2D|1|C1|A|1587
8K2D|1|C1|A|1588
8K2D|1|C1|A|1589
8K2D|1|C1|G|1590
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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