IL_8K2D_075
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- 8K2D|1|C1|G|1751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_075 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.0971
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|U|1694
8K2D|1|C1|U|1695
8K2D|1|C1|A|1696
8K2D|1|C1|A|1697
8K2D|1|C1|C|1698
*
8K2D|1|C1|G|1747
8K2D|1|C1|G|1748
8K2D|1|C1|A|1749
8K2D|1|C1|A|1750
8K2D|1|C1|G|1751
8K2D|1|C1|A|1752
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lk
- Large ribosomal subunit protein eL38
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