IL_8K2D_082

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8K2D|1|C1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_082 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0953

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|C|1918
8K2D|1|C1|G|1919
8K2D|1|C1|U|1920
8K2D|1|C1|A|1921
8K2D|1|C1|A|1922
8K2D|1|C1|C|1923
*
8K2D|1|C1|G|1928
8K2D|1|C1|G|1929
8K2D|1|C1|A|1930
8K2D|1|C1|U|1931
8K2D|1|C1|A|1932
8K2D|1|C1|A|1933
8K2D|1|C1|G|1934

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A

Chain Lp

Large ribosomal subunit protein eL43A