IL_8K2D_091

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_091 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.101

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8K2D|1|C1|U|2211
8K2D|1|C1|C|2212
8K2D|1|C1|A|2213
8K2D|1|C1|A|2214
8K2D|1|C1|A|2215
8K2D|1|C1|G|2216
8K2D|1|C1|U|2217
*
8K2D|1|C1|A|2228
8K2D|1|C1|A|2229
8K2D|1|C1|C|2230
8K2D|1|C1|C|2231
8K2D|1|C1|A|2232
8K2D|1|C1|A|2233
8K2D|1|C1|G|2234

Current chains

Chain C1

23S rRNA

Nearby chains

Chain L1

Large ribosomal subunit protein uL1A

Chain Li

Large ribosomal subunit protein eL36A

Chain Lo

Large ribosomal subunit protein eL42A