IL_8K2D_093

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8K2D|1|C1|A|2281, 8K2D|1|C1|C|2287, 8K2D|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_093 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0803

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8K2D|1|C1|C|2277
8K2D|1|C1|C|2278
8K2D|1|C1|A|2279
8K2D|1|C1|A|2280
8K2D|1|C1|A|2281
8K2D|1|C1|U|2282
8K2D|1|C1|G|2283
8K2D|1|C1|C|2284
8K2D|1|C1|C|2285
8K2D|1|C1|U|2286
8K2D|1|C1|C|2287
8K2D|1|C1|G|2288
*
8K2D|1|C1|C|2304
8K2D|1|C1|G|2305
8K2D|1|C1|C|2306
8K2D|1|C1|G|2307

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A