IL_8K2D_114

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8K2D|1|C1|G|2945, 8K2D|1|C1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_114 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0564

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8K2D|1|C1|C|2879
8K2D|1|C1|U|2880
8K2D|1|C1|C|2881
*
8K2D|1|C1|G|2943
8K2D|1|C1|U|2944
8K2D|1|C1|G|2945
8K2D|1|C1|A|2946
8K2D|1|C1|G|2947

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14A