IL_8K2D_120

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8K2D|1|C1|A|3142, 8K2D|1|C1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_120 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0895

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8K2D|1|C1|C|3004
8K2D|1|C1|A|3005
8K2D|1|C1|A|3006
8K2D|1|C1|U|3007
*
8K2D|1|C1|A|3139
8K2D|1|C1|G|3140
8K2D|1|C1|A|3141
8K2D|1|C1|A|3142
8K2D|1|C1|C|3143
8K2D|1|C1|G|3144

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13A