IL_8K2D_124

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8K2D|1|C1|U|3056, 8K2D|1|C1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_124 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0999

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8K2D|1|C1|U|3054
8K2D|1|C1|U|3055
8K2D|1|C1|U|3056
8K2D|1|C1|U|3057
8K2D|1|C1|U|3058
8K2D|1|C1|G|3059
*
8K2D|1|C1|C|3084
8K2D|1|C1|G|3085
8K2D|1|C1|A|3086
8K2D|1|C1|A|3087
8K2D|1|C1|G|3088

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Large ribosomal subunit protein eL24A

Chain Ld

Large ribosomal subunit protein eL31A