IL_8K2D_130
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8K2D|1|C1|A|3180, 8K2D|1|C1|A|3186, 8K2D|1|C1|U|3207, 8K2D|1|C1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_130 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0979
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|U|3179
8K2D|1|C1|A|3180
8K2D|1|C1|C|3181
8K2D|1|C1|G|3182
8K2D|1|C1|A|3183
8K2D|1|C1|A|3184
8K2D|1|C1|U|3185
8K2D|1|C1|A|3186
8K2D|1|C1|A|3187
8K2D|1|C1|G|3188
*
8K2D|1|C1|C|3204
8K2D|1|C1|G|3205
8K2D|1|C1|C|3206
8K2D|1|C1|U|3207
8K2D|1|C1|G|3208
8K2D|1|C1|A|3209
8K2D|1|C1|A|3210
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LH
- Large ribosomal subunit protein uL6A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lf
- Large ribosomal subunit protein eL33A
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