IL_8K2D_134

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_134 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1256

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8K2D|1|C1|C|3235
8K2D|1|C1|U|3236
8K2D|1|C1|U|3237
8K2D|1|C1|G|3238
*
8K2D|1|C1|C|3249
8K2D|1|C1|U|3250
8K2D|1|C1|U|3251
8K2D|1|C1|G|3252

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL13A