3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGUAAG*CUGAG
Length
11 nucleotides
Bulged bases
8K2D|1|C1|G|3369
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_139 not in the Motif Atlas
Homologous match to IL_8C3A_139
Geometric discrepancy: 0.0722
The information below is about IL_8C3A_139
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83162.8
Basepair signature
cWW-cWW-tSH-cWW-tHH-L
Number of instances in this motif group
4

Unit IDs

8K2D|1|C1|U|3332
8K2D|1|C1|G|3333
8K2D|1|C1|U|3334
8K2D|1|C1|A|3335
8K2D|1|C1|A|3336
8K2D|1|C1|G|3337
*
8K2D|1|C1|C|3367
8K2D|1|C1|U|3368
8K2D|1|C1|G|3369
8K2D|1|C1|A|3370
8K2D|1|C1|G|3371

Current chains

Chain C1
23S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LW
Large ribosomal subunit protein eL24A
Chain Ld
Large ribosomal subunit protein eL31A

Coloring options:


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