IL_8K2D_142

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8K2D|1|C1|U|3354, 8K2D|1|C1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_142 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.2091

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8K2D|1|C1|C|3349
8K2D|1|C1|C|3350
*
8K2D|1|C1|G|3353
8K2D|1|C1|U|3354
8K2D|1|C1|U|3355
8K2D|1|C1|G|3356

Current chains

Chain C1

23S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A