IL_8K2D_153
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8K2D|1|C2|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_153 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.1389
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8K2D|1|C2|G|143
8K2D|1|C2|U|144
8K2D|1|C2|A|145
8K2D|1|C2|U|146
8K2D|1|C2|A|147
8K2D|1|C2|A|148
8K2D|1|C2|C|149
*
8K2D|1|C2|G|165
8K2D|1|C2|C|166
8K2D|1|C2|U|167
8K2D|1|C2|A|168
8K2D|1|C2|A|169
8K2D|1|C2|U|170
8K2D|1|C2|A|171
8K2D|1|C2|C|172
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6-A
- Chain SY
- 40S ribosomal protein S24-A
Coloring options: