IL_8K2D_164

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_164 not in the Motif Atlas

Homologous match to IL_8C3A_413

Geometric discrepancy: 0.0748

The information below is about IL_8C3A_413

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8K2D|1|C2|G|389
8K2D|1|C2|G|390
8K2D|1|C2|A|391
*
8K2D|1|C2|U|406
8K2D|1|C2|A|407
8K2D|1|C2|C|408

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein eL24A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A