IL_8K2D_170
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- 8K2D|1|C2|A|541
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_170 not in the Motif Atlas
- Geometric match to IL_7ELQ_002
- Geometric discrepancy: 0.37
- The information below is about IL_7ELQ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8K2D|1|C2|G|514
8K2D|1|C2|A|515
8K2D|1|C2|G|516
*
8K2D|1|C2|C|536
8K2D|1|C2|G|537
8K2D|1|C2|A|538
8K2D|1|C2|G|539
8K2D|1|C2|G|540
8K2D|1|C2|A|541
8K2D|1|C2|A|542
8K2D|1|C2|C|543
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9-A
- Chain Se
- 40S ribosomal protein S30-A
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