3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAG*CGAGGAAC
Length
11 nucleotides
Bulged bases
8K2D|1|C2|A|541
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_170 not in the Motif Atlas
Geometric match to IL_7ELQ_002
Geometric discrepancy: 0.37
The information below is about IL_7ELQ_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

8K2D|1|C2|G|514
8K2D|1|C2|A|515
8K2D|1|C2|G|516
*
8K2D|1|C2|C|536
8K2D|1|C2|G|537
8K2D|1|C2|A|538
8K2D|1|C2|G|539
8K2D|1|C2|G|540
8K2D|1|C2|A|541
8K2D|1|C2|A|542
8K2D|1|C2|C|543

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9-A
Chain Se
40S ribosomal protein S30-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2902 s