IL_8K2D_173
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_173 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.0887
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8K2D|1|C2|A|550
8K2D|1|C2|G|551
8K2D|1|C2|G|552
8K2D|1|C2|G|553
8K2D|1|C2|C|554
8K2D|1|C2|A|555
8K2D|1|C2|A|556
8K2D|1|C2|G|557
*
8K2D|1|C2|C|587
8K2D|1|C2|U|588
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CS
- Suppressor protein STM1
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9-A
- Chain Se
- 40S ribosomal protein S30-A
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