IL_8K2D_204

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_204 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.1757

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

8K2D|1|C2|A|1234
8K2D|1|C2|C|1235
8K2D|1|C2|A|1236
*
8K2D|1|C2|U|1249
8K2D|1|C2|U|1250
8K2D|1|C2|U|1251

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14A

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein