IL_8K2D_212

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8K2D|1|C2|A|1346, 8K2D|1|C2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_212 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.161

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8K2D|1|C2|A|1345
8K2D|1|C2|A|1346
8K2D|1|C2|U|1347
8K2D|1|C2|A|1348
*
8K2D|1|C2|U|1377
8K2D|1|C2|U|1378
8K2D|1|C2|C|1379
8K2D|1|C2|U|1380

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain SU

Small ribosomal subunit protein uS10